Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs111985151 chr20:2058361 A/AT 3.89E-7 489 28.8 33.53 29.55 KM Plot
PRAD rs112011543 chr1:1159661 GTTTTA/G 0 487 31.42 26.95 9.17 KM Plot
PRAD rs112123395 chr1:202771803 C/T 5.05E-6 491 30.97 30.95 37.17 KM Plot
PRAD rs112148138 chr5:154189901 T/C 9.6E-9 489 30.3 33.27 20.47 KM Plot
PRAD rs112171381 chr11:68203318 C/T 4.06E-6 487 29.4 32.98 26.33 KM Plot
PRAD rs112259386 chr9:72896028 A/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs112261440 chr11:129951966 T/A 2.05E-6 493 30.8 32.22 22.8 KM Plot
PRAD rs112266969 chr4:187812125 G/C 2.17E-6 480 31.18 28.57 26.8 KM Plot
PRAD rs112295492 chr7:135053769 G/GT 2.87E-10 487 30.8 31.33 2.33 KM Plot
PRAD rs112335841 chr11:24246107 CCTTT/C 0.000165 491 30.8 32.9 20.47 KM Plot
PRAD rs112353881 chr2:232072796 ATTTG/A 5.81E-5 488 32.08 29.4 30.27 KM Plot
PRAD rs112358755 chr9:138718039 A/AGCTTCTTGTGC 8.44E-5 480 31.27 31.13 13.97 KM Plot
PRAD rs11242438 chr5:138009761 C/T 8.03E-6 488 30.8 31.28 25.5 KM Plot
PRAD rs112424984 chr5:171531416 G/GA 1.66E-7 493 30.87 32 13.17 KM Plot
PRAD rs11242887 chr6:3863470 C/G 7.94E-8 470 32.23 29.1 23.08 KM Plot